Marc Andre Michael Thorsten Sammeth

Bolsista de Produtividade em Pesquisa do CNPq - Nível 2 (***)

  • Endereço para acessar este CV: http://lattes.cnpq.br/5337477770035604
  • Última atualização do currículo em 29/08/2018


Hi, I am a researcher in computational biology and my story starts at the Federal University of Würzburg (2002), where graduated in biology (major: biochemistry, genetics & neurobiology, virology & immunology, minor: computer science). My PhD studies were supported by the Ernst Schering Research Foundation, and I studied specialized algorithms for multiple sequence alignments at Bielefeld University and at the Free University of Amsterdam. The German Academic Exchange service funded my post-doctoral studies at the University Pompeu Fabra, where I started to work on genomics and (alternative) splicing. I followed these research lines at the newly created Center for Genomic Regulation in Barcelona, supported by a young reseacher grant by the Spanish Ministry of Education and Science. Afterwards, I started my first group in Functional Bioinformatics at the Spanish National Sequencing Center, focusing on all aspects of functional elements as assessed by novel sequencing technologies. Since 2013 I located to Brazil, where I researched at the National Center for Computational Science before joining the Biophysics Institute Carlos Chagas Filho at the Federal University of Rio de Janeiro. The research in my lab focuses on functional genomics and transcriptomics in general. Cheers (Texto informado pelo autor)


Identificação


Nome
Marc Andre Michael Thorsten Sammeth
Nome em citações bibliográficas
SAMMETH, M.;SAMMETH, MICHAEL;SAMMETH, MICHA;Sammeth, Michael;GTEX Consortium, the

Endereço


Endereço Profissional
Universidade Federal do Rio de Janeiro, Instituto de Biofísica Carlos Chagas Filho.
CCS - Centro de Ciências da Saúde
Cidade Universitária
21941902 - Rio de Janeiro, RJ - Brasil
Telefone: (21) 40424224
URL da Homepage: http://sammeth.net


Formação acadêmica/titulação


2003 - 2005
Doutorado em Dr. rer. nat..
Universidade Federal de Bielefeld, UNI BI, Alemanha.
Título: Integrated Multiple Alignment, Ano de obtenção: 2005.
Orientador: Jens Stoye.
Coorientador: Dag Harmsen.
Bolsista do(a): Ernst-Schering Stiftung, SCHERINGSTIFTUNG, Alemanha.
Grande área: Ciências Exatas e da Terra
Grande Área: Ciências Biológicas / Área: Genética.
1996 - 2002
Graduação em Bioquimica.
Universidade Federal de Würzburg, UNI WÜRZBURG, Alemanha.


Pós-doutorado


2005 - 2008
Pós-Doutorado.
Centre de Regulació Genòmica, CRG, Espanha.
Bolsista do(a): Deutscher Akademischer Austausch Dienst, DAAD, Alemanha.
Grande área: Ciências Biológicas
Grande Área: Ciências Biológicas / Área: Biologia Geral.
Grande Área: Ciências Exatas e da Terra / Área: Ciência da Computação.


Atuação Profissional



Universidade Federal do Rio de Janeiro, UFRJ, Brasil.
Vínculo institucional

2015 - Atual
Vínculo: Civil servant, Enquadramento Funcional: Profesor, Carga horária: 40, Regime: Dedicação exclusiva.


Laboratório Nacional de Computação Científica, LNCC, Brasil.
Vínculo institucional

2013 - 2015
Vínculo: Servidor Público, Enquadramento Funcional: Pesquisador, Carga horária: 40


Centre de Regulació Genòmica, CRG, Espanha.
Vínculo institucional

2012 - 2013
Vínculo: Professor Visitante, Enquadramento Funcional: Pesquisador, Carga horária: 40, Regime: Dedicação exclusiva.

Vínculo institucional

2008 - 2010
Vínculo: Bolsista, Enquadramento Funcional: Pesquisador jovem, Regime: Dedicação exclusiva.
Outras informações
Bolsa: Juan de la Cierva

Vínculo institucional

2005 - 2008
Vínculo: Scholarship, Enquadramento Funcional: Postdoc
Outras informações
Fellowship of the German Academic Exchange Service (DAAD)


Centre Nacional d'Anàlisis Genòmica, CNAG, Espanha.
Vínculo institucional

2010 - 2012
Vínculo: , Enquadramento Funcional: Pesquisador, Regime: Dedicação exclusiva.


Universitat Politècnica de Catalunya, UPC, Espanha.
Vínculo institucional

2007 - 2010
Vínculo: Colaborator, Enquadramento Funcional: Researcher


National Human Genome Research Institute, NHGRI, Estados Unidos.
Vínculo institucional

2003 - 2012
Vínculo: Colaborator, Enquadramento Funcional: Researcher


Universitat Pompeu Fabra, UPF, Espanha.
Vínculo institucional

2005 - 2005
Vínculo: Visitor Professor, Enquadramento Funcional: Adjunct Professor


Julius-Maximilians-Universität Würzburg, WURZBURG, Alemanha.
Vínculo institucional

2002 - 2002
Vínculo: Scholarship, Enquadramento Funcional: Internship
Outras informações
JAVA programming for the Department of Computer Science 2


Bayer AG, BAYER, Alemanha.
Vínculo institucional

2000 - 2000
Vínculo: Scholarship, Enquadramento Funcional: Internship
Outras informações
primer design for SNP pyrosequencing



Projetos de pesquisa


2015 - Atual
Utilização de métodos genômicos e computacionais para o estudo funcional de genes cruciais ao desenvolvimento do besouro Tribolium castaneum
Situação: Em andamento; Natureza: Pesquisa.
Alunos envolvidos: Graduação: (3) / Mestrado acadêmico: (5) / Doutorado: (10) .
Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / Thiago Motta Venancio - Coordenador / Helena Maria Marcolla Araujo - Integrante / Gustavo Lazzaro Rezende - Integrante / Attilio Pane - Integrante / Rodrigo Nunes da Fonseca - Integrante.Financiador(es): Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do RJ - Auxílio financeiro.
2014 - Atual
Pensa Rio
Descrição: Electrophysiological, genetic, biochemical and histological characterization of induced pluripotent stem cells obtained from patients with neural, cardiac and renal diseases: Investigating the cellular and molecular changes in the pathway from pluripotency to ?in vitro? differentiation to decipher physiopathological mechanisms.
Situação: Em andamento; Natureza: Pesquisa.
2010 - 2012
Geuvadis
Descrição: The Geuvadis project aims to bring together the knowledge and resources on medical genome sequencing at a European level and allow researchers to develop and test new hypotheses on the genetic basis of disease; to develop standards in sequencing data processing, storage, submission etc. The analysis of samples from the medical field, using RNA and DNA sequencing will allow the project to set up standards in operating procedures and biological/medical interpretation of sequence data in relation to clinical phenotypes. In the RNA-sequencing work package of the Geuvadis project, have combined transcriptome and genome sequencing data by performing mRNA and small RNA sequencing on 465 lymphoblastoid cell line (LCL) samples from 5 populations of the 1000 Genomes Project: the CEPH (CEU), Finns (FIN), British (GBR), Toscani (TSI) and Yoruba (YRI). Of these samples, 423 were part of the 1000 Genomes Phase 1 dataset (Abecasis et al. Nature 2012) with genome sequencing data, and the remaining 42 were imputed from Omni 2.5M SNP array data. The main paper presenting the data set and summarizing the key findings, with a focus on transcriptome variantion and its genetic component (Lappalainen et al. submitted) will be published in spring 2013. Additionally, the consortium will be publishing companion papers on technical variation in RNA-sequencing (?t Hoen et al. submitted), splicing variation (Ferreira et al. submitted), loss-of-function variation (Rivas et al. in preparation), as well as on other aspects of the data..
Situação: Concluído; Natureza: Pesquisa.
2010 - Atual
GTEx - Genotype Tissue Expression
Descrição: The Genotype-Tissue Expression project (GTEx) is providing a comprehensive atlas of gene expression and regulation across multiple human tissues. It will enable studies of expression quantitative trait loci (eQTLs), alternative splicing, and the tissue specificity of gene regulatory mechanisms, and aid in the interpretation of Genome-Wide Association Studies (GWAS)..
Situação: Em andamento; Natureza: Pesquisa.
Alunos envolvidos: Doutorado: (2) .
Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / Roderic Guigo - Integrante / The GTEx Consortium - Coordenador / Emanoulis Dermitzakis - Integrante / Kirstn Adlie - Integrante.Financiador(es): National Institute of Health - Outra.
2007 - 2010
Metodos Algoritmicos y Algebraicos en Bioinformatica
Descrição: Ayudas para potenciar las relaciones científicas internacionales dentro de las áreas geográficas definidas..
Situação: Concluído; Natureza: Pesquisa.
2003 - 2012
Encode
Descrição: The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The project started with two components - a pilot phase and a technology development phase. The pilot phase tested and compared existing methods to rigorously analyze a defined portion of the human genome sequence (See: ENCODE Pilot Project). The conclusions from this pilot project were published in June 2007 in Nature and Genome Research [genome.org]. The findings highlighted the success of the project to identify and characterize functional elements in the human genome. The technology development phase also has been a success with the promotion of several new technologies to generate high throughput data on functional elements. With the success of the initial phases of the ENCODE Project, NHGRI funded new awards in September 2007 to scale the ENCODE Project to a production phase on the entire genome along with additional pilot-scale studies. Like the pilot project, the ENCODE production effort is organized as an open consortium and includes investigators with diverse backgrounds and expertise in the production and analysis of data (See: ENCODE Participants and Projects). This production phase also includes a Data Coordination Center [genome.ucsc.edu] to track, store and display ENCODE data along with a Data Analysis Center to assist in integrated analyses of the data. All data generated by ENCODE participants will be rapidly released into public databases (See: Accessing ENCODE Data) and available through the project's Data Coordination Center..
Situação: Concluído; Natureza: Pesquisa.


Membro de corpo editorial


2015 - Atual
Periódico: ISCB Community Journal (F1000)


Membro de comitê de assessoramento


2016 - Atual
Agência de fomento: Conselho Nacional de Desenvolvimento Científico e Tecnológico


Revisor de periódico


2003 - Atual
Periódico: Bioinformatics (Oxford. Print)
2005 - Atual
Periódico: Nucleic Acids Research (Online)
2009 - Atual
Periódico: PLoS Computational Biology
2010 - Atual
Periódico: BMC Genomics
2007 - Atual
Periódico: BMC Bioinformatics
2012 - Atual
Periódico: Genetics and Molecular Biology (Impresso)
2013 - Atual
Periódico: Nature Biotechnology (Print)
2013 - Atual
Periódico: Nature Communications


Áreas de atuação


1.
Grande área: Ciências Biológicas / Área: Biofísica / Subárea: Biofísica Molecular.
2.
Grande área: Ciências Biológicas / Área: Bioquímica / Subárea: Biologia Molecular.
3.
Grande área: Ciências Biológicas / Área: Biologia Geral / Subárea: Bioinformatics.
4.
Grande área: Ciências Biológicas / Área: Genética / Subárea: Genética Humana e Médica.
5.
Grande área: Ciências Biológicas / Área: Genética / Subárea: Alternative Splicing.
6.
Grande área: Ciências Biológicas / Área: Genética / Subárea: RNA-Seq.


Idiomas


Espanhol
Compreende Bem, Fala Bem, Lê Bem, Escreve Razoavelmente.
Catalão
Compreende Bem, Fala Bem, Lê Razoavelmente, Escreve Razoavelmente.
Alemão
Compreende Bem, Fala Bem, Lê Bem, Escreve Bem.
Inglês
Compreende Bem, Fala Bem, Lê Bem, Escreve Bem.
Português
Compreende Bem, Fala Bem, Lê Bem, Escreve Razoavelmente.
Francês
Compreende Razoavelmente, Fala Razoavelmente, Lê Pouco, Escreve Pouco.


Prêmios e títulos


2015
RJ Young Researcher (Jovem Cientista do Nosso Estado), Research Foundation of the State of Rio de Janeiro (FAPERJ).
2015
Productivity Grant (Bolsista de Produtividade do CNPq - Nível 2), National Counsel of Technological and Scientific Development (CNPq).
2011
Researcher Fellowship (Betriu de Pinos), Catalan Academic Research Foundation (AGAUR).
2007
Young Researcher Fellowship (Juan de la Cierva), Spanish Ministry of Science and Education (MEC).
2005
Postdoctoral Fellowship, German Academic Exchange Service (DAAD).
2003
PhD fellowship, Ernst Schering Research Foundation.
2002
Best Poster Award, American Society for Microbiology (ASM).


Produções



Produção bibliográfica
Citações

Web of Science
Total de trabalhos:31
Total de citações:1783
Fator H:13
Sammeth, Michael  Data: 12/02/2014

SCOPUS
Total de trabalhos:20
Total de citações:2184
AUTHOR-NAME("Sammeth M")  Data: 12/02/2014

Outras
Total de trabalhos:47
Total de citações:3003
Michael Sammeth  Data: 11/08/2015

Artigos completos publicados em periódicos

1.
3FERREIRA, PEDRO G.2018FERREIRA, PEDRO G. ; MUÑOZ-AGUIRRE, MANUEL ; REVERTER, FERRAN ; SÁ GODINHO, CAIO P. ; SOUSA, ABEL ; AMADOZ, ALICIA ; SODAEI, REZA ; HIDALGO, MARTA R. ; PERVOUCHINE, DMITRI ; CARBONELL-CABALLERO, JOSE ; NURTDINOV, RAMIL ; BRESCHI, ALESSANDRA ; AMADOR, RAZIEL ; OLIVEIRA, PATRÍCIA ; ÇUBUK, CANKUT ; CURADO, JOÃO ; AGUET, FRANÇOIS ; OLIVEIRA, CARLA ; DOPAZO, JOAQUIN ; Sammeth, Michael ; ARDLIE, KRISTIN G. ; GUIGÓ, RODERIC . The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nature Communications, v. 9, p. 490, 2018.

2.
2BORONI, MARIANA2018BORONI, MARIANA ; Sammeth, Michael ; GAVA, SANDRA GROSSI ; JORGE, NATASHA ANDRESSA NOGUEIRA ; MACEDO, ANDRÉA MARA ; MACHADO, CARLOS RENATO ; MOURÃO, MARINA MORAES ; FRANCO, GLÓRIA REGINA . Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni. Scientific Reports, v. 8, p. 3877, 2018.

3.
1COELHO, VITOR2018COELHO, VITOR ; Sammeth, Michael . An automated method for detecting alternatively spliced protein domains. Bioinformatics, v. 1, p. 1, 2018.

4.
5AGUET, FRANÇOIS2017AGUET, FRANÇOIS ARDLIE, KRISTIN G. CUMMINGS, BERYL B. GELFAND, ELLEN T. GETZ, GAD HADLEY, KANE HANDSAKER, ROBERT E. HUANG, KATHERINE H. KASHIN, SEVA KARCZEWSKI, KONRAD J. LEK, MONKOL LI, XIAO MACARTHUR, DANIEL G. NEDZEL, JARED L. NGUYEN, DUYEN T. NOBLE, MICHAEL S. SEGRÈ, AYELLET V. TROWBRIDGE, CASANDRA A. TUKIAINEN, TARU ABELL, NATHAN S. BALLIU, BRUNILDA BARSHIR, RUTH BASHA, OMER BATTLE, ALEXIS BOGU, GIREESH K. , et al.BROWN, ANDREW BROWN, CHRISTOPHER D. CASTEL, STEPHANE E. CHEN, LIN S. CHIANG, COLBY CONRAD, DONALD F. COX, NANCY J. DAMANI, FARHAN N. DAVIS, JOE R. DELANEAU, OLIVIER DERMITZAKIS, EMMANOUIL T. ENGELHARDT, BARBARA E. ESKIN, ELEAZAR FERREIRA, PEDRO G. FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D.H. GLINER, GENNA GLOUDEMANS, MICHAEL J. GUIGO, RODERIC HALL, IRA M. HAN, BUHM HE, YUAN HORMOZDIARI, FARHAD HOWALD, CEDRIC KYUNG IM, HAE JO, BRIAN YONG KANG, EUN KIM, YUNGIL KIM-HELLMUTH, SARAH LAPPALAINEN, TUULI LI, GEN LI, XIN LIU, BOXIANG MANGUL, SERGHEI MCCARTHY, MARK I. MCDOWELL, IAN C. MOHAMMADI, PEJMAN MONLONG, JEAN MONTGOMERY, STEPHEN B. MUÑOZ-AGUIRRE, MANUEL NDUNGU, ANNE W. NICOLAE, DAN L. NOBEL, ANDREW B. OLIVA, MERITXELL ONGEN, HALIT PALOWITCH, JOHN J. PANOUSIS, NIKOLAOS PAPASAIKAS, PANAGIOTIS PARK, YOSON PARSANA, PRINCY PAYNE, ANTHONY J. PETERSON, CHRISTINE B. QUAN, JIE REVERTER, FERRAN SABATTI, CHIARA SAHA, ASHIS Sammeth, Michael SCOTT, ALEXANDRA J. SHABALIN, ANDREY A. SODAEI, REZA STEPHENS, MATTHEW STRANGER, BARBARA E. STROBER, BENJAMIN J. SUL, JAE HOON TSANG, EMILY K. URBUT, SARAH VAN DE BUNT, MARTIJN WANG, GAO WEN, XIAOQUAN WRIGHT, FRED A. XI, HUALIN S. YEGER-LOTEM, ESTI ZAPPALA, ZACHARY ZAUGG, JUDITH B. ZHOU, YI-HUI AKEY, JOSHUA M. BATES, DANIEL CHAN, JOANNE CHEN, LIN S. CLAUSSNITZER, MELINA DEMANELIS, KATHRYN DIEGEL, MORGAN DOHERTY, JENNIFER A. FEINBERG, ANDREW P. FERNANDO, MARIAN S. HALOW, JESSICA HANSEN, KASPER D. HAUGEN, ERIC HICKEY, PETER F. HOU, LEI JASMINE, FARZANA JIAN, RUIQI JIANG, LIHUA JOHNSON, AUDRA KAUL, RAJINDER KELLIS, MANOLIS KIBRIYA, MUHAMMAD G. LEE, KRISTEN BILLY LI, JIN LI, QIN LI, XIAO LIN, JESSICA LIN, SHIN LINDER, SANDRA LINKE, CAROLINE LIU, YAPING MAURANO, MATTHEW T. MOLINIE, BENOIT MONTGOMERY, STEPHEN B. NELSON, JEMMA NERI, FIDENCIO J. OLIVA, MERITXELL PARK, YONGJIN PIERCE, BRANDON L. RINALDI, NICOLA J. RIZZARDI, LINDSAY F. SANDSTROM, RICHARD SKOL, ANDREW SMITH, KEVIN S. SNYDER, MICHAEL P. STAMATOYANNOPOULOS, JOHN STRANGER, BARBARA E. TANG, HUA TSANG, EMILY K. WANG, LI WANG, MENG VAN WITTENBERGHE, NICHOLAS WU, FAN ZHANG, RUI NIERRAS, CONCEPCION R. BRANTON, PHILIP A. CARITHERS, LATARSHA J. Guan, Ping MOORE, HELEN M. RAO, ABHI VAUGHT, JIMMIE B. GOULD, SARAH E. LOCKART, NICOLE C. MARTIN, CASEY STRUEWING, JEFFERY P. VOLPI, SIMONA ADDINGTON, ANJENE M. KOESTER, SUSAN E. LITTLE, A. ROGER BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRIAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA R. DAVIS, DAVID A. MASH, DEBORAH C. UNDALE, ANITA H. SMITH, ANNA M. TABOR, DAVID E. ROCHE, NANCY V. MCLEAN, JEFFREY A. VATANIAN, NEGIN ROBINSON, KARNA L. SOBIN, LESLIE BARCUS, MARY E. VALENTINO, KIMBERLY M. QI, LIQUN HUNTER, STEVEN HARIHARAN, PUSHPA SINGH, SHILPI UM, KI SUNG MATOSE, TAKUNDA TOMASZEWSKI, MARIA M. BARKER, LAURA K. MOSAVEL, MAGHBOEBA SIMINOFF, LAURA A. TRAINO, HEATHER M. FLICEK, PAUL JUETTEMANN, THOMAS RUFFIER, MAGALI SHEPPARD, DAN TAYLOR, KIERON TREVANION, STEPHEN J. ZERBINO, DANIEL R. CRAFT, BRIAN GOLDMAN, MARY HAEUSSLER, MAXIMILIAN KENT, W. JAMES LEE, CHRISTOPHER M. PATEN, BENEDICT ROSENBLOOM, KATE R. VIVIAN, JOHN ZHU, JINGCHUN AGUET, FRANÇOIS BROWN, ANDREW A. CASTEL, STEPHANE E. DAVIS, JOE R. HE, YUAN JO, BRIAN MOHAMMADI, PEJMAN PARK, YOSON PARSANA, PRINCY SEGRÈ, AYELLET V. STROBER, BENJAMIN J. ZAPPALA, ZACHARY CUMMINGS, BERYL B. GELFAND, ELLEN T. HADLEY, KANE HUANG, KATHERINE H. LEK, MONKOL LI, XIAO NEDZEL, JARED L. NGUYEN, DUYEN Y. NOBLE, MICHAEL S. SULLIVAN, TIMOTHY J. TUKIAINEN, TARU MACARTHUR, DANIEL G. GETZ, GAD ADDINGTON, ANJENE Guan, Ping KOESTER, SUSAN LITTLE, A. ROGER LOCKHART, NICOLE C. MOORE, HELEN M. RAO, ABHI STRUEWING, JEFFERY P. VOLPI, SIMONA BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRYAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA MASH, DEBORAH C. DAVIS, DAVID A. SOBIN, LESLIE BARCUS, MARY E. BRANTON, PHILIP A. ABELL, NATHAN S. BALLIU, BRUNILDA DELANEAU, OLIVIER FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D. H. GLINER, GENNA GLOUDEMANS, MICHAEL J. HAN, BUHM HE, AMY Z. HORMOZDIARI, FARHAD LI, XIN LIU, BOXIANG KANG, EUN YONG MCDOWELL, IAN C. ONGEN, HALIT PALOWITCH, JOHN J. PETERSON, CHRISTINE B. QUON, GERALD RIPKE, STEPHAN SAHA, ASHIS SHABALIN, ANDREY A. SHIMKO, TYLER C. SUL, JAE HOON TERAN, NICOLE A. TSANG, EMILY K. ZHANG, HAILEI ZHOU, YI-HUI BUSTAMANTE, CARLOS D. COX, NANCY J. GUIGÓ, RODERIC KELLIS, MANOLIS MCCARTHY, MARK I. CONRAD, DONALD F. ESKIN, ELEAZAR LI, GEN NOBEL, ANDREW B. SABATTI, CHIARA STRANGER, BARBARA E. WEN, XIAOQUAN WRIGHT, FRED A. ARDLIE, KRISTIN G. DERMITZAKIS, EMMANOUIL T. LAPPALAINEN, TUULI BATTLE, ALEXIS BROWN, CHRISTOPHER D. ENGELHARDT, BARBARA E. MONTGOMERY, STEPHEN B. ; Genetic effects on gene expression across human tissues. NATURE, v. 550, p. 204-213, 2017.

5.
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33FOISSAC, S.2007FOISSAC, S. ; SAMMETH, M. . ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic Acids Research (Online), v. 35, p. W297-W299, 2007.

35.
35SAMMETH, MICHAEL2006SAMMETH, MICHAEL; STOYE, JENS . Comparing Tandem Repeats with Duplications and Excisions of Variable Degree. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Print), v. 3, p. 395-407, 2006.

36.
36SAMMETH, MICHAEL2006SAMMETH, MICHAEL; HERINGA, JAAP . Global multiple-sequence alignment with repeats. Proteins (Print), v. 64, p. 263-274, 2006.

37.
37SAMMETH, M.2006SAMMETH, M.; GRIEBEL, T. ; TILLE, F. ; STOYE, J. . Panta rhei (QAlign2): an open graphical environment for sequence analysis. Bioinformatics (Oxford. Print), v. 22, p. 889-890, 2006.

38.
40HARMSEN, DAG2003HARMSEN, DAG ; DOSTAL, STEFAN ; ROTH, ANDREAS ; NIEMANN, STEFAN ; ROTHGÄNGER, JÖRG ; SAMMETH, MICHAEL ; ALBERT, JÜRGEN ; FROSCH, MATTHIAS ; RICHTER, ELVIRA . RIDOM: comprehensive and public sequence database for identification of Mycobacterium species. BMC Infectious Diseases (Online), v. 3, p. 26, 2003.

39.
38SAMMETH, MICHAEL2003SAMMETH, MICHAEL; MORGENSTERN, B. ; STOYE, J. . Divide-and-conquer multiple alignment with segment-based constraints. Bioinformatics (Oxford. Print), v. 19, p. ii189-ii195, 2003.

40.
39SAMMETH, M.2003SAMMETH, M.; ROTHGANGER, J. ; ESSER, W. ; ALBERT, J. ; STOYE, J. ; HARMSEN, D. . QAlign: quality-based multiple alignments with dynamic phylogenetic analysis. Bioinformatics (Oxford. Print), v. 19, p. 1592-1593, 2003.

Capítulos de livros publicados
1.
OTI, MARTIN ; SAMMETH, M. . Comparative Genomics in Human. Comparative Genomics. 0ed.New York: Springer, 2016, v. , p. 0-.

2.
OTI, MARTIN ; PANE, A. ; SAMMETH, MICHAEL . Comparative Genomics in Drosophila melanogaster. Comparative Genomics. 1ed.New York: Springer, 2016, v. , p. 1-.

3.
FOISSAC, SYLVAIN ; Sammeth, Michael . Analysis of Alternative Splicing Events in Custom Gene Datasets by AStalavista. In: E Picardi. (Org.). Methods in Molecular Biology. 1ed.: Springer New York, 2015, v. 1269, p. 379-392.

4.
RIBECA, PAOLO ; Lacroix, Vincent ; Sammeth, Michael ; GUIGÓ, RODERIC . Analysis of RNA Transcripts by High-Throughput RNA Sequencing. In: Stefan Stamm, Christopher W. J. Smith, Reinhard Lührmann. (Org.). Alternative pre-mRNA Splicing: Theory and Protocols. 1ed.Weinheim: Wiley-VCH Verlag GmbH & Co KGaA, 2012, v. , p. 544-554.

5.
LACROIX, V. ; SAMMETH, MICHAEL ; GUIGÓ, RODERIC ; BERGERON, A. . Exact Transcriptome Reconstruction from Short Sequence Reads. WABI 2008. 1ed.Berlin, Heidelberg: Springer, 2008, v. 5251, p. 50-63.

6.
Sammeth, Michael; Valiente, Gabriel ; GUIGÓ, RODERIC . Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. In: Research in Computational Molecular Biology. (Org.). Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 1ed.Heidelberg, Berlin: Springer, 2008, v. 4955, p. 372-395.

7.
Sammeth, Michael; WENIGER, THOMAS ; HARMSEN, DAG ; STOYE, JENS . Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). In: WABI 2005. (Org.). Lecture Notes in Computer Science. 1ed.Berlin, Heidelberg: Springer Berlin Heidelberg, 2005, v. 3692, p. 276-290.

Textos em jornais de notícias/revistas
1.
SAMMETH, M.. Putting a Pretty Face on Multiple Sequence Alignment. The Scientist, 06 out. 2003.

Apresentações de Trabalho
1.
SAMMETH, M.. Transcriptômica. 2015. (Apresentação de Trabalho/Conferência ou palestra).

2.
SAMMETH, M.. Graphs, Genes and Geometry. 2015. (Apresentação de Trabalho/Seminário).

3.
SAMMETH, M.. Splicing Graphs -- DAGs on Genes. 2015. (Apresentação de Trabalho/Seminário).

4.
SAMMETH, M.. Human transcriptional variation across individuals and tissues. 2014. (Apresentação de Trabalho/Seminário).

5.
SAMMETH, M.. Human Transcriptome Variations. 2014. (Apresentação de Trabalho/Seminário).

6.
SAMMETH, M.. Individual- and tissue-specific variations of the human transcriptome. 2014. (Apresentação de Trabalho/Conferência ou palestra).

7.
SAMMETH, M.. Ribonucleic ACID, a heterogenic BASE of life. 2014. (Apresentação de Trabalho/Seminário).

8.
SAMMETH, M.. Bioinformática e genómica--o que esta rolando uma década depois da gente completar o genoma humano. 2014. (Apresentação de Trabalho/Seminário).

9.
Sammeth, Michael. Personal transcription and splicing throughout human populations. 2013. (Apresentação de Trabalho/Conferência ou palestra).

10.
Sammeth, Michael. Small changes in the big picture: genetic fine-tuning in transcriptome variation across human populations. 2013. (Apresentação de Trabalho/Seminário).

11.
Sammeth, Michael. Transcription and splicing in personalized transcriptomes of lymphoblastoid cell lines. 2013. (Apresentação de Trabalho/Seminário).

12.
FERREIRA, P. ; MONLONG, J. ; PORTA, M. G. ; BARANN, M. ; LAPPALAIANEN, T. ; WIELAND, T. ; FRIEDLAENDER, M. ; GOUIN, A. ; RIVAS, MA. ; ROSENSTIEL, P. ; DERMITZAKIS, E. T. ; GUIGO, R. ; Sammeth, Michael . Small changes in the big picture: genetic fine-tuning in transcriptome variation across human populations. 2013. (Apresentação de Trabalho/Congresso).

13.
Sammeth, Michael. RNA-Seq at a Next-Generation Sequencing Center. 2012. (Apresentação de Trabalho/Seminário).

14.
Sammeth, Michael. RNA-Seq at a Next-Generation Sequencing Center. 2012. (Apresentação de Trabalho/Seminário).

15.
Sammeth, Michael. The Flux Project. 2011. (Apresentação de Trabalho/Conferência ou palestra).

16.
Sammeth, Michael. RNA-Seq and Transcript Quantification. 2011. (Apresentação de Trabalho/Congresso).

17.
Sammeth, Michael. Simulation of Digital Northerns and RNA-Seq Samba. 2010. (Apresentação de Trabalho/Conferência ou palestra).

18.
Sammeth, Michael. RNA-Seq and Transcript Quantification. 2010. (Apresentação de Trabalho/Simpósio).

19.
Sammeth, Michael. Transcriptome genetics using second generation sequencing in a Caucasian population. 2010. (Apresentação de Trabalho/Congresso).

20.
Sammeth, Michael. RECONSTRUCTION OF ALTERNATIVE SPLICE VARIANTS AND ASSOCIATED ABUNDANCES FROM SHORT SEQUENCE READS. 2009. (Apresentação de Trabalho/Conferência ou palestra).

21.
Sammeth, Michael. The Computational Exploration of (Alternative) Splicing Mechanisms. 2009. (Apresentação de Trabalho/Conferência ou palestra).

22.
Sammeth, Michael; Lacroix, Vincent ; RIBECA, PAOLO ; BERGERON, A. ; GUIGO, RODERIC . Reconstruction of Alternative Splice Variants and Associated Abundances from Short Sequence Reads. 2009. (Apresentação de Trabalho/Conferência ou palestra).

23.
Sammeth, Michael. The Flux Project. 2009. (Apresentação de Trabalho/Congresso).

24.
Sammeth, Michael. RNA-Seq and Transcript Quantification. 2009. (Apresentação de Trabalho/Seminário).

25.
Sammeth, Michael. The Flux Project. 2009. (Apresentação de Trabalho/Seminário).

26.
Sammeth, Michael; Valiente, Gabriel ; GUIGO, RODERIC . Bubbles, blobs and galls: Alternative Splicing Events of Dimension k in Splicing Graphs. 2008. (Apresentação de Trabalho/Conferência ou palestra).

27.
Sammeth, Michael. AStalavista - Alternative Splicing Analyzes. 2008. (Apresentação de Trabalho/Conferência ou palestra).

28.
Sammeth, Michael. AStalavista. 2007. (Apresentação de Trabalho/Seminário).

29.
Sammeth, Michael. AStalavista - Alternative Splicing Analyzes. 2007. (Apresentação de Trabalho/Comunicação).

30.
Sammeth, Michael. The Alternative Splicing Landscape of Mammals. 2007. (Apresentação de Trabalho/Seminário).

31.
Sammeth, Michael; FOISSAC, SYLVAIN . conferencia internacional da biologica computacional europea (ECCB). 2006. (Apresentação de Trabalho/Conferência ou palestra).

32.
Sammeth, Michael; FOISSAC, SYLVAIN ; GUIGO, RODERIC . conferencia nacional da bioinformatica alema (GCB). 2006. (Apresentação de Trabalho/Conferência ou palestra).

33.
Sammeth, Michael; FOISSAC, SYLVAIN ; GUIGO, RODERIC . Comparison of Alternative Splicing Structures in Eukaryotes. 2006. (Apresentação de Trabalho/Conferência ou palestra).

34.
Sammeth, Michael; FOISSAC, SYLVAIN ; GUIGO, RODERIC . conferencia nacional da bioinformatica espanhola (JdB). 2006. (Apresentação de Trabalho/Conferência ou palestra).

35.
Sammeth, Michael. Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 2006. (Apresentação de Trabalho/Seminário).

36.
Sammeth, Michael. AStalavista - Alternative Splicing Analyzes. 2006. (Apresentação de Trabalho/Seminário).

37.
Sammeth, Michael. Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 2006. (Apresentação de Trabalho/Seminário).

38.
Sammeth, Michael; WENIGER, T. ; HARMSEN, DAG ; STOYE, JENS . Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). 2005. (Apresentação de Trabalho/Conferência ou palestra).

39.
Sammeth, Michael. Aligning intron-exon structures of alternatively spliced genes. 2005. (Apresentação de Trabalho/Conferência ou palestra).

40.
Sammeth, Michael. ESDI Aligner. 2005. (Apresentação de Trabalho/Seminário).

41.
Sammeth, Michael; MORGENSTERN, B. ; STOYE, JENS . Divide-and-Conquer Multiple Alignment. 2003. (Apresentação de Trabalho/Conferência ou palestra).

42.
Sammeth, Michael; MORGENSTERN, B. ; STOYE, JENS . Divide-and-Conquer Multiple Alignment. 2003. (Apresentação de Trabalho/Conferência ou palestra).

43.
Sammeth, Michael. Integrated Multiple Alignment. 2003. (Apresentação de Trabalho/Seminário).

44.
Sammeth, Michael; ROTHGANGER, J. ; ESSER, W. ; ALBERT, J. ; HARMSEN, D. . QAlign: Quality-based multiple alignments. 2002. (Apresentação de Trabalho/Congresso).

45.
Sammeth, Michael. Quality-based Multiple Alignment. 2002. (Apresentação de Trabalho/Seminário).


Produção técnica
Assessoria e consultoria
1.
Sammeth, Michael. RIDOM GmbH. 2002.

Programas de computador sem registro
1.
GRIEBEL, T. ; ZACHER, B. ; RIBECA, P. ; RAINERI, E. ; Lacroix, Vincent ; GUIGO, RODERIC ; Sammeth, Michael . Flux Simulator. 2012.

2.
SAMMETH, M.. Flux Simulator. 2012.

3.
Sammeth, Michael. Flux Capacitor. 2010.

4.
SAMMETH, M.. Flux Capacitor. 2010.

5.
Sammeth, Michael; FOISSAC, SYLVAIN ; GUIGO, RODERIC . AStalavista. 2007.

6.
SAMMETH, M.. AStalavista. 2007.

7.
Sammeth, Michael; GRIEBEL, T. ; TILLE, F. ; STOYE, JENS . QAlign 2 - Panta rhe. 2006.

8.
Sammeth, Michael; STOYE, JENS . ESDI Aligner. 2005.

9.
Sammeth, Michael; HERINGA, JAAP . RAlign. 2004.

10.
Sammeth, Michael; ROTHGÄNGER, JÖRG ; ESSER, W. ; ALBERT, JÜRGEN ; STOYE, JENS ; HARMSEN, DAG . QAlign. 2002.

Trabalhos técnicos

Demais tipos de produção técnica
1.
Sammeth, Michael. Multiple Alignment Algorithms. 2005. (Curso de curta duração ministrado/Extensão).

2.
Sammeth, Michael; STOYE, JENS . Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). 2005. (Relatório de pesquisa).

3.
Sammeth, Michael. Advanced Java Programming. 2004. (Curso de curta duração ministrado/Especialização).

4.
Sammeth, Michael. Deep Java. 2003. (Curso de curta duração ministrado/Especialização).

5.
Sammeth, Michael. Algorithms and Datastructures. 2003. (Curso de curta duração ministrado/Extensão).


Produção artística/cultural
Artes Visuais
1.
SAMMETH, MICHAEL; FOISSAC, SYLVAIN ; Rademacher, K ; GRIEBEL, T. ; GUIGÓ, RODERIC . A General Definition and Nomenclature for Alternative Splicing Events. 2008. Vídeo.

2.
SAMMETH, MICHAEL; RIBECA, PAOLO ; LACROIX, V. ; GUIGÓ, RODERIC . Reconstruction of Alternative Splice Variants and Associated Abundances from Short Sequence Reads. 2008. Vídeo.



Bancas



Participação em bancas de trabalhos de conclusão
Mestrado
1.
SAMMETH, MICHAEL; HEISE, N.; MARVAL, M. G.; LEITAO, A. A. C.. Participação em banca de Thayane Bottaro de Brito. Transcriptômica do Trypanosoma cruzi em resposta ao estresse térmico. 2016. Dissertação (Mestrado em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro.

2.
SAMMETH, MICHAEL. Participação em banca de Ayslan Castro Brant. Análise da integração genômica do Papilomavírus Humano e a expressão de seus genes em câncer cervical. 2015. Dissertação (Mestrado em ONCOLOGIA) - Instituto Nacional de Câncer.

Teses de doutorado
1.
MOREIRA, M. A. M.; ABDELHAY, E. S. F. W.; SCHRAGO, C. E. G.; SAMMETH, MICHAEL; BONAMINO, M. H.; MORAES, M. O.. Participação em banca de PAULO THIAGO DE SOUZA SANTOS. Estudo de Alterações Moleculares em Carcinoma Epidermóide de Esôfago através de Sequenciamento de RNA (RNA-Seq). 2016. Tese (Doutorado em ONCOLOGIA) - Instituto Nacional de Câncer.

2.
MORAIS, G. L.; Sammeth, Michael. Participação em banca de Guilherme Loss de Morais. Caracterização filogenética das proteínas inativadoras de ribossomos (RIPs) de mamona (Ricinus communis L.) e análise da expressão dos genes Rcom RIPs durante o desenvolvimento da semente. 2013. Tese (Doutorado em Biologia Celular e Molecular) - Universidade Federal do Rio Grande do Sul.

Qualificações de Doutorado
1.
WEBER, G; FELICORI, L. F.; SAMMETH, M.. Participação em banca de Mainá Bitar Lourenço. Aplicação da bioinformática no estudo de sequências e estruturas biológicas de agentes etiológicos de doenças tropicais. 2013 - Universidade Federal de Minas Gerais.

Qualificações de Mestrado
1.
SAMMETH, MICHAEL; URMENYI, T. P.; OLIVEIRA, F. M. B.; SANTOS, E. O.. Participação em banca de Leandro Santos. a) Tipos de RNA e características estruturais; b) Análise de expressão em grande escala (ênfase em RNA-seq);. 2016. Exame de qualificação (Mestrando em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro.

Monografias de cursos de aperfeiçoamento/especialização
1.
SANTOS, E. O.; SAMMETH, M.; OLIVEIRA, F. M. B.. Participação em banca de Daniel MOreira da costa leite. Caracterização do Fator Transcricional PhoB: Relaçoes estruturais e funcionais com o genoma de Vibrio cholerae. 2016 - Universidade Federal do Rio de Janeiro, Instituto de Biofísica Carlos Chaga.



Participação em bancas de comissões julgadoras
Outras participações
1.
SAMMETH, M.. Pesquisador. 2015. Instituto Nacional de Câncer.



Eventos



Participação em eventos, congressos, exposições e feiras
1.
FAPESP/EU-LIFE Symposium on Cancer Genomics, Inflammation & Immunity. 2016. (Simpósio).

2.
International Plant & Animal Genome XXV. Automated functional annotation of protein products in alternatively spliced genes. 2016. (Congresso).

3.
International Plant & Animal Genome XXV. Annotating the Impact of Alternative Splicing on Protein Domains in Plants. 2016. (Congresso).

4.
Seminar at IBqM-UFRJ.The Splicing Anatomy across Human Cell Types, Tissues and Individuals. 2016. (Seminário).

5.
23rd Congress of the International Union of Biochemistry and Molecular Biology (IUBMB). The Phenotypic Landscape across Human Individuals and Tissues: Lessons from the Genotype-Tissue Expression (GTEX) Pilot Project. 2015. (Congresso).

6.
44th Annual Meeting of the Brazilian Society for Biochemistry and Molecular Biology ? SBBq. The Phenotypic Landscape across Human Individuals and Tissues: Lessons from the Genotype-Tissue Expression (GTEX) Pilot Project. 2015. (Congresso).

7.
X-meeting + Brazilian Symposium on Bioinformatics (BSB). Gene correlation networks with Dual-seq data. 2015. (Congresso).

8.
X-meeting + Brazilian Symposium on Bioinformatics (BSB). The ASTA-FUNK tool: Alternative Splicing Trancriptional Analyses analyzing FUNctional Knowledge. 2015. (Congresso).

9.
60th Annual SBG Meeting. Participant. 2014. (Congresso).

10.
SB-meeting.Europe-Brazil Meeting on Systems and Synthetic Biology. 2014. (Encontro).

11.
Seminar BQ / USP.Seminário da bioquimica / USP. 2014. (Seminário).

12.
Seminar IB/USP.Seminário do IB / USP. 2014. (Seminário).

13.
UFRJ Biophysics.Seminário do IBCCF/UFRJ. 2014. (Seminário).

14.
Seminar CBiot / UFRGS.Seminário do CBiot / UFRGS. 2013. (Seminário).

15.
Seminar ICB / UFMG.Seminário do ICB / UFMG. 2013. (Seminário).

16.
UFRJ Advanced School in functional genomics.Escola de Altos Estudos em Genômica Funcional. 2013. (Simpósio).


Organização de eventos, congressos, exposições e feiras
1.
LAGERGREN, J. MCLYSAGHT, A. SANKOFF, D. CHAUVE, C. EL-MABROUK, N. DIALLO, A. B. BILEL, B. BARREIRO, L. BURGER, G. HAMEL, S. LAFOND, M. LANG, F. MILOSZ, R. NOUTAHI, E. ALEKSEYEV, M. ARVESTAD, L. BERGERON, A. BRAGA, M. D. V. CHINDELEVITCH, L. CSUROS, M. EBERSBERGER, I. FERTIN, G. JAHN, K. SAMMETH, MICHAEL JAVED, A. , et al.MALDE, K. MIKLOS, I. MORET, B. OUANGRAOUA, A. PRZYTYCKA, T. SAGOT, M. SWENSON, K. TANNIER, E. TESLER, G. TULLER, T. WANG, L. WARNOW, T. YANCOPOULOS, S. ZHANG, L. ZHENG, C. ZHENG, J. ; Recomb-CG (Comparative Genomics). 2016. (Congresso).

2.
AGURO, F. ; VALENCIA, A. ; HANSON, B. ; GAETA, B. ; ROST, B. ; KOVATS, D. ; MELO, F. ; OLIVEIRA, G. ; RIVAS, J. L. ; SAMMETH, MICHAEL . ISCB Latin America (International Society for Computational Biology). 2016. (Congresso).

3.
SAMMETH, MICHAEL. ISCB Latin America. 2016. (Congresso).

4.
SAMMETH, MICHAEL. Recomb CG. 2016. (Congresso).

5.
ALEKSEYEV, M. ARVESTAD, L. BERGERON, A. BRAGA, M. D. V. CHAUVE, C. EBERSBERGER, I. EL-MABROUK, N. FERTIN, G. JAHN, K. JAVED, A. LAGERGREN, J. LIPTAK, Z. MAKINEN, V. MALDE, K. MCLYSAGHT, A. MEIDANIS, J. MORET, B. MIKLOS, I. OUANGRAOUA, A. PRZYTYCKA, T. SAGOT, M. SAMMETH, MICHAEL SETUBAL, J. STOYE, J. SWENSON, K. , et al.TANNIER, E. TESLER, G. TULLER, T. WANG, L. WARNOW, T. YANCOPOULOS, S. ZHANG, L. ZHENG, C. ZHENG, J. ; Recomb-CG (Comparative Genomics). 2015. (Congresso).

6.
SAMMETH, MICHAEL. Recomb-CG. 2015. (Congresso).

7.
DEVIGNES, M. MOREAU, Y. ALBRECHT, M. AZUAJE, F. COULET, A. DAUCHEZ, M. SCHBATH, S. LENGAUER, T. LENHOF, H. MICHOT, M. MORIN, E. MOULINIER, L. POCH, O. RITCHIE, D. SAGOT, M. SMAIL-TABBONE, M. THOMPSON, J. ABOUELHODA, M. DURET, L. KOLODNY, R. SALAMIN, N. ALIOTO, T. DUTHEIL, J. KOSAKOVSKY-POND, S. SAMMETH, MICHAEL , et al.ALTMANN, A. EBELING, M. KOZAKOV, D. SAMWALD, M. ANDERS, S. EDERER, M. KRAUSE, R. SANSONE, S. ARAKAWA, K. EDWARDS, R. KRIJGSMAN, O. SARKANS, U. ARES, S. ELOFSSON, A. KRYSTHAFOVYCH, A. SBALZARINI, I. BACKOFEN, R. FALQUET, L. KUHN, T. SCHABER, J. BALLESTER, P. FIGGE, T. LEGENDRE, M. SCHAFFER, A. BARBERIS, M. FLEMING, R. LEHNHOF, H. SCHLESSINGER, A. BARTON, G. FODEH, S. LEITNER, F. SCHLICKER, A. BATAILLON, T. FRATERNALI, F. LESER, U. SCHLIEP, A. BEER, M. A. FRIEDEL, C. C. LI, M. SCHOEBERL, B. BEISSBARTH, T. FRISHMAN, D. LIN, Y. SCHROEDER, M. BEN-HUR, A. GAGNEUR, J. LINIAL, M. SCHULZ, J. BEN-TAL, N. GASPIN, C. LOPEZ, R. SCHULZ, M. BENOS, P. T. GEDEON, T. LORD, P. SCHWARTZ, R. BERGER, B. GEVAERT, O. MA, S. SCORNAVACCA, C. LLAVORI, R. B. GIBRAT, J. MARSDEN, B. SELBIG, J. BERNECHE, S. GIEGERICH, R. MARTENS, L. SHAH, N. BIROL, I. GIORGETTI, A. MARTI-RENOM, M. A. SHOMRON, N. BLAKE, J. GKOUTOS, G. MCGUFFIN, L. SMITH, B. BLANCHETTE, M. GONNELLA, G. MCLYSAGHT, A. SOEDING, J. BOECKMANN, B. GREGER, L. MENSHYKAU, D. SPANG, R. BONIZZONI, P. GRUNING, A. MICHAILIDIS, G. STAHLBERG, H. BORGWARDT, K. GUEROIS, R. MONTGOMERY, S. STAMATAKIS, A. BROCHIER-ARMANET, C. HAAS, J. MORGENSTERN, B. STATNIKOV, A. BROMBERG, Y. HASTINGS, J. MOSTAFAVI, S. STEGLE, O. BROWN, A. HEERMANN, D. MUFFATO, M. STELLING, J. BUCETA, J. HELMER-CITTERICH, M. NAGY, M. STOYE, J. BUIL, A. HERICHE, J. NEBEL, M. SUNG, W. BUJNICKI, J. HERMJAKOB, H. NEDELLEC, C. TASKESEN, E. BULLINGER, E. HERRMANN, C. NENADIC, G. THIEFFRY, D. BUSCH, H. HIGGINS, D. NIKOLOSKI, Z. THOMAS, P. BUSSEMAKER, H. HILLER, S. NING, Z. TIELEMAN, P. CAMACHO, C. HOBOLTH, A. PAPP, B. TIMMER, J. CAMPROUX, A. HOEHNDORF, R. PARK, J. C. TIURYN, J. CANISIUS, S. HOFACKER, I. PARKINSON, H. TOWNSEND, J. CARBONE, A. HOFFMANN, D. PARTS, L. TRESCH, A. CASTELO, R. HOFFMANN, S. PERES, S. TSAI, J. CHEN, R. HOLM, L. PETERSEN, K. TUFFERY, P. CHIAPELLO, H. HOOFT, R. PHILIPPE, H. VALENCIA, A. COIN, L. HUBBARD, S. PONTY, Y. VALLOTTON, P. COLLIER, N. HUBER, W. PORNPUTTAPONG, N. HAM, R. V. COLLIN, O. HUPE, P. PREISSNER, R. HELDEN, J. V. COUTO, F. IBBERSON, M. PRILUSKY, J. VANDIJK, D. COZZETTO, D. IBER, D. PUJANA, M. A. VENCLOVAS, Č CRAWFORD, F. IORIO, F. PUPKO, T. VERT, J. CROSET, S. ISELI, C. RAHMANN, S. VIALETTE, S. CSABA, G. JAEGER, S. RAJASEKARAN, S. VINGRON, M. CSIKASZ-NAGY, A. JENSEN, J. RATSCH, G. VITEK, O. DALCHE-BUC, F. YEPES, A. J. RATTRAY, M. HAESELER, A. V. DAGAN, T. JONASSEN, I. REINERT, K. WALDISPUHL, J. DANCHIN, A. JUNG, K. RENARD, B. WANG, X. DATTA, S. KAFKAS, S. RENQIANGMIN, M. WELCH, J. DAUBIN, V. KALININA, O. RIBECA, P. WHELAN, S. DAUCHEL, H. KANE, M. RINALDI, F. WODAK, S. CRUZ, X. L. KATOH, K. RITCHIE, D. WOLF, V. RIDDER, D. KELLEY, L. ROBINSON, M. WOLFSON, H. J. RIDDER, J. KEMMEREN, P. ROBINSON, P. XENARIOS, I. DEANE, C. KERSEY, P. ROBINSON-RECHAVI, M. ZASLAVSKY, E. DENISE, A. KIM, J. ROCKE, D. ZERBINO, D. DESSIMOZ, C. KIM, J. ROMBAUTS, S. ZHANG, L. DEUTSCH, E. W. KIM, P. ROUGEMONT, J. ZHANG, X. BERNARDO, D. KIRCHER, M. ROZAS, J. ZINOVYEV, A. DONCIC, A. KLAU, G. W. RUCZINSKI, I. ZUYDERDUYN, S. DRABLOS, F. KNIBBE, C. RUDIGER, S. DROBNJAK, I. KOLDE, R. RZHETSKY, A. ; European Conference of Computational Biology (ECCB). 2014. (Congresso).



Orientações



Orientações e supervisões em andamento
Tese de doutorado
1.
Ayslan Castro Brant. Splicing e transcriptomica em HPV. Início: 2015. Tese (Doutorado em Genetica) - Universidade Federal do Rio de Janeiro. (Coorientador).

2.
Vitor Lima Coelho. QuantION. Início: 2015. Tese (Doutorado em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior. (Orientador).

3.
Caio Padoan de Sá Godinho. Dual-Seq. Início: 2015. Tese (Doutorado em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior. (Orientador).

Supervisão de pós-doutorado
1.
Martin Oti. Início: 2016. Universidade Federal do Rio de Janeiro.

Iniciação científica
1.
Monyque Evans Souza Lima. Navegador de Genomas. Início: 2016 - Universidade Federal do Rio de Janeiro. (Orientador).

2.
Julia da Silva Santos. Navegador de Genomas. Início: 2016 - Universidade Federal do Rio de Janeiro. (Orientador).

3.
Bruna Aparecida Bernardes da Silva. Splicing em neuronios. Início: 2016 - Universidade Federal do Rio de Janeiro. (Orientador).

4.
Anna Carolina Silva Garcia. Transcriptomica em Patogenos e Vetores. Início: 2016 - Universidade Federal do Rio de Janeiro. (Orientador).


Orientações e supervisões concluídas
Dissertação de mestrado
1.
Vitor Lima Coelho. Functional Analysis of Alternative Splicing Events. 2015. Dissertação (Mestrado em Modelagem Computacional) - Laboratório Nacional de Computação Científica, Conselho Nacional de Desenvolvimento Científico e Tecnológico. Orientador: Marc Andre Michael Thorsten Sammeth.

Tese de doutorado
1.
Marcio Lassance Martins de Oliveira. Epigenetic Profile Analysis. 2015. Tese (Doutorado em Pós graduação em Biofisica (Ciencias Biologicas)) - Universidade Federal do Rio de Janeiro, Instituto de Biofísica Carlos Chaga, Conselho Nacional de Desenvolvimento Científico e Tecnológico. Orientador: Marc Andre Michael Thorsten Sammeth.

2.
Katrin Rademacher. Evidence of skipped exons interacting with neighboring alternative splice sites. 2009. Tese (Doutorado em Genome Informatics) - Bielefeld University, . Orientador: Marc Andre Michael Thorsten Sammeth.



Inovação



Programa de computador sem registro
1.
Sammeth, Michael; GRIEBEL, T. ; TILLE, F. ; STOYE, JENS . QAlign 2 - Panta rhe. 2006.

2.
Sammeth, Michael; ROTHGÄNGER, JÖRG ; ESSER, W. ; ALBERT, JÜRGEN ; STOYE, JENS ; HARMSEN, DAG . QAlign. 2002.

3.
SAMMETH, M.. AStalavista. 2007.

4.
SAMMETH, M.. Flux Capacitor. 2010.

5.
SAMMETH, M.. Flux Simulator. 2012.

6.
Sammeth, Michael; STOYE, JENS . ESDI Aligner. 2005.


Projetos de pesquisa


Educação e Popularização de C & T



Artigos
Artigos completos publicados em periódicos
1.
32Sammeth, Michael2008Sammeth, Michael; FOISSAC, SYLVAIN ; GUIGÓ, RODERIC . A General Definition and Nomenclature for Alternative Splicing Events. PLOS Computational Biology (Online), v. 4, p. e1000147, 2008.


Livros e capítulos
1.
FOISSAC, SYLVAIN ; Sammeth, Michael . Analysis of Alternative Splicing Events in Custom Gene Datasets by AStalavista. In: E Picardi. (Org.). Methods in Molecular Biology. 1ed.: Springer New York, 2015, v. 1269, p. 379-392.


Textos em jornais de notícias/revistas
1.
SAMMETH, M.. Putting a Pretty Face on Multiple Sequence Alignment. The Scientist, 06 out. 2003.


Apresentações de Trabalho
1.
FERREIRA, P. ; MONLONG, J. ; PORTA, M. G. ; BARANN, M. ; LAPPALAIANEN, T. ; WIELAND, T. ; FRIEDLAENDER, M. ; GOUIN, A. ; RIVAS, MA. ; ROSENSTIEL, P. ; DERMITZAKIS, E. T. ; GUIGO, R. ; Sammeth, Michael . Small changes in the big picture: genetic fine-tuning in transcriptome variation across human populations. 2013. (Apresentação de Trabalho/Congresso).

2.
SAMMETH, M.. Human transcriptional variation across individuals and tissues. 2014. (Apresentação de Trabalho/Seminário).

3.
SAMMETH, M.. Human Transcriptome Variations. 2014. (Apresentação de Trabalho/Seminário).

4.
SAMMETH, M.. Individual- and tissue-specific variations of the human transcriptome. 2014. (Apresentação de Trabalho/Conferência ou palestra).

5.
SAMMETH, M.. Ribonucleic ACID, a heterogenic BASE of life. 2014. (Apresentação de Trabalho/Seminário).

6.
SAMMETH, M.. Bioinformática e genómica--o que esta rolando uma década depois da gente completar o genoma humano. 2014. (Apresentação de Trabalho/Seminário).

7.
SAMMETH, M.. Transcriptômica. 2015. (Apresentação de Trabalho/Conferência ou palestra).


Programa de Computador sem registro de patente
1.
Sammeth, Michael; GRIEBEL, T. ; TILLE, F. ; STOYE, JENS . QAlign 2 - Panta rhe. 2006.

2.
Sammeth, Michael; STOYE, JENS . ESDI Aligner. 2005.

3.
Sammeth, Michael; HERINGA, JAAP . RAlign. 2004.

4.
Sammeth, Michael; ROTHGÄNGER, JÖRG ; ESSER, W. ; ALBERT, JÜRGEN ; STOYE, JENS ; HARMSEN, DAG . QAlign. 2002.


Cursos de curta duração ministrados
1.
Sammeth, Michael. Multiple Alignment Algorithms. 2005. (Curso de curta duração ministrado/Extensão).

2.
Sammeth, Michael. Algorithms and Datastructures. 2003. (Curso de curta duração ministrado/Extensão).

3.
Sammeth, Michael. Advanced Java Programming. 2004. (Curso de curta duração ministrado/Especialização).


Organização de eventos, congressos, exposições e feiras
1.
SAMMETH, MICHAEL. ISCB Latin America. 2016. (Congresso).

2.
SAMMETH, MICHAEL. Recomb CG. 2016. (Congresso).

3.
SAMMETH, MICHAEL. Recomb-CG. 2015. (Congresso).


Artes Visuais
1.
SAMMETH, MICHAEL; FOISSAC, SYLVAIN ; Rademacher, K ; GRIEBEL, T. ; GUIGÓ, RODERIC . A General Definition and Nomenclature for Alternative Splicing Events. 2008. Vídeo.

1.
SAMMETH, MICHAEL; RIBECA, PAOLO ; LACROIX, V. ; GUIGÓ, RODERIC . Reconstruction of Alternative Splice Variants and Associated Abundances from Short Sequence Reads. 2008. Vídeo.




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